Transcript: LINC02458:15

Basic information

LNCipedia transcript ID: LINC02458:15 
HGNC Gene Symbol: LINC02458    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2458
Ensembl Gene ID: ENSG00000246363
Ensembl Transcript ID: ENST00000500381
Location (hg38): chr12:89010681-89019679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2941 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500381; ENST00000500381.2; RP11-13A1.1-001; OTTHUMT00000406530.1; NONHSAT029800
Alternative gene names: ENSG00000246363; RP11-13A1.1; ENSG00000246363.2; OTTHUMG00000169908.1; LINC02458


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.5022 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02458:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP6-2:3
3.1 lnc-DUSP6-2:3
4.0 lnc-DUSP6-2:3
4.1 lnc-DUSP6-2:3
5.0 lnc-DUSP6-2:3
5.1 LINC02458:8
5.2 LINC02458:15