Transcript: LINC02458:9

Basic information

LNCipedia transcript ID: LINC02458:9 
LNCipedia gene ID: LINC02458
Ensembl Gene ID: ENSG00000257156
Ensembl Transcript ID: ENST00000549278
Location (hg38): chr12:89048187-89309553
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 599 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549278; ENST00000549278.1; RP11-13A1.3-001; OTTHUMT00000406532.1; NONHSAT029802
Alternative gene names: ENSG00000257156; RP11-13A1.3; ENSG00000257156.1; OTTHUMG00000169910.1; AC024909.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.4791 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02458:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP6-1:1
3.1 lnc-DUSP6-1:1
4.0 lnc-DUSP6-1:1
4.1 lnc-DUSP6-2:4
5.0 lnc-DUSP6-2:4
5.1 LINC02458:2
5.2 LINC02458:9