Transcript: LINC02468:5

Basic information

LNCipedia transcript ID: LINC02468:5 
HGNC Gene Symbol: LINC02468    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2468
Ensembl Gene ID: ENSG00000256499
Ensembl Transcript ID: ENST00000543778
Location (hg38): chr12:20120980-20129813
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 633 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543778; ENST00000543778.1; CTC-465D4.1-001; OTTHUMT00000401586.1; NONHSAT027225
Alternative gene names: ENSG00000256499; CTC-465D4.1; ENSG00000256499.1; OTTHUMG00000168914.1; LINC02468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.744 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02468:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO1A2-2:2
3.1 lnc-SLCO1A2-3:2
4.0 lnc-SLCO1A2-3:2
4.1 lnc-SLCO1A2-3:2
5.0 lnc-SLCO1A2-3:2
5.1 LINC02468:3
5.2 LINC02468:5