Transcript: LINC02469:5

Basic information

LNCipedia transcript ID: LINC02469:5 
HGNC Gene Symbol: LINC02469    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2469
Ensembl Gene ID: ENSG00000248408
Ensembl Transcript ID: ENST00000506460
Location (hg38): chr4:79663761-79696837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 741 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007567; ENST00000506460; ENST00000506460.1; RP11-452C8.1-001; OTTHUMT00000365982.1; NONHSAT097120
Alternative gene names: XLOC_003588; linc-PRDM8-1; ENSG00000248408; RP11-452C8.1; ENSG00000248408.1; OTTHUMG00000161747.1; LINC02469


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6473 non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02469:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM8-1:1
3.1 lnc-PRDM8-2:1
4.0 lnc-PRDM8-2:1
4.1 lnc-PRDM8-2:1
5.0 lnc-PRDM8-2:1
5.1 LINC02469:3
5.2 LINC02469:5