Transcript: LINC02471:9

Basic information

LNCipedia transcript ID: LINC02471:9 
LNCipedia gene ID: LINC02471
Location (hg38): chr12:40166252-40167707
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00020233; ENST00000417422; ENST00000417422.1; AC079630.2-002; OTTHUMT00000133438.1; NONHSAT027722
Alternative gene names: XLOC_009712; linc-LRRK2; ENSG00000223914; AC079630.2; ENSG00000223914.1; OTTHUMG00000059745.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.1373 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02471:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRK2-1:2
3.1 lnc-LRRK2-1:2
4.0 lnc-LRRK2-1:2
4.1 lnc-LRRK2-1:2
5.0 lnc-LRRK2-1:2
5.1 LINC02471:5
5.2 LINC02471:9