Transcript: LINC02474:5

Basic information

LNCipedia transcript ID: LINC02474:5 
HGNC Gene Symbol: LINC02474    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2474
Ensembl Gene ID: ENSG00000228437
Ensembl Transcript ID: ENST00000441160
Location (hg38): chr1:221966410-221984964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1148 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000395; ENST00000441160; ENST00000441160.1; RP11-400N13.2-001; OTTHUMT00000091111.1; NONHSAT009651
Alternative gene names: XLOC_000575; linc-MIA3-2; ENSG00000228437; RP11-400N13.2; ENSG00000228437.1; OTTHUMG00000037424.1; ENSG00000228437.5; LINC02474


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5538 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02474:5 no no no no

Available literature

  1. Wang (2018), Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses., Mol Med Rep
  2. Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther
  3. Tang (2013), Systematically profiling and annotating long intergenic non-coding RNAs in human embryonic stem cell., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MIA3-2:2
3.1 lnc-MIA3-3:2
4.0 lnc-MIA3-3:2
4.1 lnc-MIA3-3:2
5.0 lnc-MIA3-3:2
5.1 LINC02474:3
5.2 LINC02474:5