Transcript: LINC02475:10

Basic information

LNCipedia transcript ID: LINC02475:10 
HGNC Gene Symbol: LINC02475    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2475
Ensembl Gene ID: ENSG00000251350
Ensembl Transcript ID: ENST00000507639
Location (hg38): chr4:44016861-44020256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507639; TCONS_00007524; ENST00000507639.1; RP11-328N19.1-002; OTTHUMT00000360660.2
Alternative gene names: ENSG00000251350; XLOC_003528; linc-GUF1-1; RP11-328N19.1; ENSG00000251350.1; OTTHUMG00000160456.2; LVCAT1; LINC02475


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4352 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02475:10 no no no no

Available literature

  1. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GUF1-3:1
3.1 lnc-GUF1-3:1
4.0 lnc-GUF1-3:1
4.1 lnc-GUF1-3:1
5.0 lnc-GUF1-3:1
5.1 LINC02475:3
5.2 LINC02475:10