Transcript: LINC02477:3

Basic information

LNCipedia transcript ID: LINC02477:3 
HGNC Gene Symbol: LINC02477    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2477
Ensembl Gene ID: ENSG00000249425
Ensembl Transcript ID: ENST00000512652
Location (hg38): chr4:160539254-160586817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1417 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007671; ENST00000512652; ENST00000512652.1; RP11-502M1.2-001; OTTHUMT00000364886.1; NONHSAT099032
Alternative gene names: XLOC_003762; linc-NPY5R-4; ENSG00000249425; RP11-502M1.2; ENSG00000249425.1; OTTHUMG00000161427.1; LINC02477


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.1888 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02477:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAPGEF2-2:1
3.1 lnc-RAPGEF2-2:1
4.0 lnc-RAPGEF2-2:1
4.1 lnc-RAPGEF2-2:1
5.0 lnc-RAPGEF2-2:1
5.1 LINC02477:2
5.2 LINC02477:3