Transcript: LINC02485:7

Basic information

LNCipedia transcript ID: LINC02485:7 
HGNC Gene Symbol: LINC02485    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2485
Ensembl Gene ID: ENSG00000248456
Ensembl Transcript ID: ENST00000506412
Location (hg38): chr4:135121268-135123779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 289 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007839; ENST00000506412; ENST00000506412.1; RP11-553P9.3-002; OTTHUMT00000364195.1; NONHSAT098370
Alternative gene names: XLOC_004085; linc-PABPC4L-5; ENSG00000248456; RP11-553P9.3; ENSG00000248456.1; OTTHUMG00000161216.1; LINC02485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.1102 non-coding 
CPAT coding probability 7.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02485:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH18-6:1
3.1 lnc-PCDH18-8:1
4.0 lnc-PCDH18-8:1
4.1 lnc-PCDH18-8:1
5.0 lnc-PCDH18-8:1
5.1 LINC02485:2
5.2 LINC02485:7