Transcript: LINC02489:5

Basic information

LNCipedia transcript ID: LINC02489:5 
HGNC Gene Symbol: LINC02489    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2489
Ensembl Gene ID: ENSG00000255007
Ensembl Transcript ID: ENST00000527239
Location (hg38): chr11:46256355-46274547
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 354 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527239.1; CTD-2589M5.4-001; OTTHUMT00000391829.1; NONHSAT021164
Alternative gene names: ENSG00000255007.1; CTD-2589M5.4; OTTHUMG00000166910.1; LINC02489


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.0138 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02489:5 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHRM4-1:1
4.0 lnc-CHRM4-1:1
4.1 lnc-CHRM4-1:1
5.0 lnc-CHRM4-1:1
5.1 LINC02489:2
5.2 LINC02489:5