Transcript: LINC02489:6

Basic information

LNCipedia transcript ID: LINC02489:6 
LNCipedia gene ID: LINC02489
Location (hg38): chr11:46256320-46270614
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019635; NONHSAT021163
Alternative gene names: XLOC_009437; linc-PHF21A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.0138 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02489:6 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHRM4-1:1
3.1 lnc-CHRM4-1:2
4.0 lnc-CHRM4-1:2
4.1 lnc-CHRM4-1:2
5.0 lnc-CHRM4-1:2
5.1 LINC02489:3
5.2 LINC02489:6