Transcript: LINC02500:5

Basic information

LNCipedia transcript ID: LINC02500:5 
HGNC Gene Symbol: LINC02500    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2500
Ensembl Gene ID: ENSG00000249460
Ensembl Transcript ID: ENST00000512547
Location (hg38): chr4:181261161-181265029
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007918; ENST00000512547; ENST00000512547.1; RP11-665C14.2-001; OTTHUMT00000361840.1; NONHSAT099418
Alternative gene names: XLOC_004192; linc-AGA-5; ENSG00000249460; RP11-665C14.2; ENSG00000249460.1; OTTHUMG00000160700.1; LINC02500


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.8371 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02500:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCTD-4:2
3.1 lnc-DCTD-6:2
4.0 lnc-DCTD-6:2
4.1 lnc-DCTD-6:2
5.0 lnc-DCTD-6:2
5.1 LINC02500:3
5.2 LINC02500:5