Transcript: LINC02511:8

Basic information

LNCipedia transcript ID: LINC02511:8 
HGNC Gene Symbol: LINC02511    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2511
Ensembl Gene ID: ENSG00000248869
Ensembl Transcript ID: ENST00000505736
Location (hg38): chr4:136796722-137212799
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1668 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007845; ENST00000505736; ENST00000505736.1; RP11-138I17.1-001; OTTHUMT00000364263.2; NONHSAT098386; ENST00000505736.5
Alternative gene names: XLOC_004090; linc-PABPC4L-1; ENSG00000248869; RP11-138I17.1; ENSG00000248869.1; OTTHUMG00000161243.2; ENSG00000248869.5; LINC02511


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.0251 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02511:8 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH18-2:1
3.1 lnc-PCDH18-2:1
4.0 lnc-PCDH18-2:1
4.1 lnc-PCDH18-2:1
5.0 lnc-PCDH18-2:1
5.1 LINC02511:4
5.2 LINC02511:8