Transcript: LINC02529:6

Basic information

LNCipedia transcript ID: LINC02529:6 
HGNC Gene Symbol: LINC02529    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2529
Ensembl Gene ID: ENSG00000234777
Ensembl Transcript ID: ENST00000429657
RefSeq ID: NR_125873
Location (hg38): chr6:159383531-159396443
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 772 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011404; ENST00000429657; ENST00000429657.1; RP11-125D12.2-001; OTTHUMT00000042903.1; NONHSAT115843; NR_125873.1
Alternative gene names: XLOC_005523; linc-WTAP-3; ENSG00000234777; RP11-125D12.2; ENSG00000234777.1; OTTHUMG00000015931.1; LINC02529; LOC102724053


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.5406 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02529:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FNDC1-4:2
3.1 lnc-FNDC1-4:2
4.0 lnc-FNDC1-4:2
4.1 lnc-FNDC1-4:2
5.0 lnc-FNDC1-4:2
5.1 LINC02529:3
5.2 LINC02529:6