Transcript: LINC02535:26

Basic information

LNCipedia transcript ID: LINC02535:26 
HGNC Gene Symbol: LINC02535    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2535
Ensembl Gene ID: ENSG00000234155
Ensembl Transcript ID: ENST00000455071
RefSeq ID: NR_134634
Location (hg38): chr6:85387219-85390186
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2513 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000455071; ENST00000455071.1; RP11-30P6.6-001; OTTHUMT00000041386.1; NR_134634.1
Alternative gene names: ENSG00000234155; RP11-30P6.6; ENSG00000234155.1; OTTHUMG00000015137.1; LINC02535; LOC101928820


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.9143 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02535:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX14-1:2
3.1 lnc-SNX14-1:1
4.0 lnc-SNX14-1:1
4.1 lnc-SNX14-1:1
5.0 lnc-SNX14-1:1
5.1 LINC02535:14
5.2 LINC02535:26