Transcript: LINC02538:6

Basic information

LNCipedia transcript ID: LINC02538:6 
HGNC Gene Symbol: LINC02538    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2538
Ensembl Gene ID: ENSG00000272549
Ensembl Transcript ID: ENST00000609107
Location (hg38): chr6:167666840-167679270
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4569 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609107.1
Alternative gene names: ENSG00000272549.1; RP11-351J23.2; LINC02538


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4063 non-coding 
CPAT coding probability 62.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02538:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C6orf123-5:1
4.0 lnc-C6orf123-5:1
4.1 lnc-C6orf123-5:1
5.0 lnc-C6orf123-5:1
5.1 LINC02538:2
5.2 LINC02538:6