Transcript: LINC02541:60

Basic information

LNCipedia transcript ID: LINC02541:60 
LNCipedia gene ID: LINC02541
Location (hg38): chr6:113627285-113632397
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012259; NONHSAT114564
Alternative gene names: XLOC_005810; linc-LAMA4-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.0123 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02541:60 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC2-2:7
3.1 lnc-HDAC2-2:6
4.0 lnc-HDAC2-2:6
4.1 lnc-HDAC2-2:6
5.0 lnc-HDAC2-2:6
5.1 LINC02541:28
5.2 LINC02541:60