Transcript: LINC02544:4

Basic information

LNCipedia transcript ID: LINC02544:4 
HGNC Gene Symbol: LINC02544    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2544
Ensembl Gene ID: ENSG00000261039
Ensembl Transcript ID: ENST00000564830
RefSeq ID: NR_125863
Location (hg38): chr6:169175304-169182740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011246; NONHSAT116187; NR_125863; ENST00000564830.2; NR_125863.1
Alternative gene names: XLOC_005936; linc-DACT2-3; ENSG00000261039.2; RP11-417E7.2; LINC02544; LOC101929504


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4458 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02544:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THBS2-2:1
3.1 lnc-THBS2-2:2
4.0 lnc-THBS2-2:2
4.1 lnc-THBS2-2:2
5.0 lnc-THBS2-2:2
5.1 LINC02544:2
5.2 LINC02544:4