Transcript: LINC02547:3

Basic information

LNCipedia transcript ID: LINC02547:3 
HGNC Gene Symbol: LINC02547    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2547
Ensembl Gene ID: ENSG00000254486
Ensembl Transcript ID: ENST00000531559
RefSeq ID: NR_135109
Location (hg38): chr11:12030875-12061785
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3308 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000531559; ENST00000531559.1; RP13-631K18.2-001; OTTHUMT00000385877.1; NONHSAT018035; NR_135109.1
Alternative gene names: ENSG00000254486; RP13-631K18.2; ENSG00000254486.1; OTTHUMG00000165710.1; LINC02547; LOC105376554


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.6122 non-coding 
CPAT coding probability 7.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02547:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MICAL2-3:1
3.1 lnc-MICAL2-4:1
4.0 lnc-MICAL2-4:1
4.1 lnc-MICAL2-4:1
5.0 lnc-MICAL2-4:1
5.1 LINC02547:2
5.2 LINC02547:3