Transcript: LINC02548:4

Basic information

LNCipedia transcript ID: LINC02548:4 
HGNC Gene Symbol: LINC02548    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2548
Ensembl Gene ID: ENSG00000255411
Ensembl Transcript ID: ENST00000531749
Location (hg38): chr11:13785390-13848002
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531749; ENST00000531749.1; RP11-98J9.1-001; OTTHUMT00000386010.1; NONHSAT018116
Alternative gene names: ENSG00000255411; RP11-98J9.1; ENSG00000255411.1; OTTHUMG00000165747.1; LINC02548


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -363.6063 non-coding 
CPAT coding probability 8.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02548:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAR1-1:1
3.1 lnc-FAR1-1:1
4.0 lnc-FAR1-1:1
4.1 lnc-FAR1-1:1
5.0 lnc-FAR1-1:1
5.1 LINC02548:2
5.2 LINC02548:4