Transcript: LINC02548:5

Basic information

LNCipedia transcript ID: LINC02548:5 
LNCipedia gene ID: LINC02548
Location (hg38): chr11:13840654-13847953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00019239
Alternative gene names: XLOC_009070; linc-SPON1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.8665 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02548:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAR1-1:2
3.1 lnc-FAR1-1:2
4.0 lnc-FAR1-1:2
4.1 lnc-FAR1-1:2
5.0 lnc-FAR1-1:2
5.1 LINC02548:3
5.2 LINC02548:5