Transcript: LINC02551:10

Basic information

LNCipedia transcript ID: LINC02551:10 
LNCipedia gene ID: LINC02551
Ensembl Gene ID: ENSG00000255455
Ensembl Transcript ID: ENST00000525716
Location (hg38): chr11:130866254-130870247
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3994 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT025149; ENST00000525716.2
Alternative gene names: ENSG00000255455.2; RP11-890B15.3; AP003486.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.0534 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02551:10 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-890B15.2.1-1:3
4.0 lnc-RP11-890B15.2.1-1:3
4.1 lnc-RP11-890B15.2.1-1:3
5.0 lnc-RP11-890B15.2.1-1:3
5.1 LINC02551:3
5.2 LINC02551:10