Transcript: LINC02557:3

Basic information

LNCipedia transcript ID: LINC02557:3 
HGNC Gene Symbol: LINC02557    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2557
Ensembl Gene ID: ENSG00000225413
Ensembl Transcript ID: ENST00000432249
Location (hg38): chr22:23512494-23513602
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432249; ENST00000432249.2; AP000345.4-001; OTTHUMT00000320304.2; NONHSAT083897
Alternative gene names: ENSG00000225413; AP000345.4; ENSG00000225413.2; OTTHUMG00000150840.2; LINC02557


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.4996 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02557:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGLL1-1:1
3.1 lnc-IGLL1-1:1
4.0 lnc-IGLL1-1:1
4.1 lnc-IGLL1-7:1
5.0 lnc-IGLL1-7:1
5.1 LINC02557:2
5.2 LINC02557:3