Transcript: LINC02560:3

Basic information

LNCipedia transcript ID: LINC02560:3 
HGNC Gene Symbol: LINC02560    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2560
Ensembl Gene ID: ENSG00000268307
Ensembl Transcript ID: ENST00000596379
Location (hg38): chr19:58400221-58400679
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068386; ENST00000596379.1
Alternative gene names: ENSG00000268307.1; CTD-2619J13.13; LINC02560


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -798.652 non-coding 
CPAT coding probability 13.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02560:3 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS5-1:1
4.0 lnc-RPS5-1:1
4.1 lnc-RPS5-1:1
5.0 lnc-RPS5-1:1
5.1 LINC02560:2
5.2 LINC02560:3