Transcript: LINC02561:21

Basic information

LNCipedia transcript ID: LINC02561:21 
HGNC Gene Symbol: LINC02561    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2561
Ensembl Gene ID: ENSG00000224034
Ensembl Transcript ID: ENST00000449457
Location (hg38): chr10:5266033-5271236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 692 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017911; ENST00000449457; ENST00000449457.1; RP11-445P17.8-001; OTTHUMT00000046542.1; NONHSAT011147
Alternative gene names: XLOC_008706; linc-AKR1C2-1; ENSG00000224034; RP11-445P17.8; ENSG00000224034.1; OTTHUMG00000017590.1; LINC02561


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.1022 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02561:21 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKR1CL1-1:1
3.1 lnc-AKR1CL1-1:1
4.0 lnc-AKR1CL1-1:1
4.1 lnc-AKR1CL1-1:1
5.0 lnc-AKR1CL1-1:1
5.1 LINC02561:11
5.2 LINC02561:21