Transcript: LINC02572:14

Basic information

LNCipedia transcript ID: LINC02572:14 
HGNC Gene Symbol: LINC02572    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2572
Ensembl Gene ID: ENSG00000229536
Ensembl Transcript ID: ENST00000450531
Location (hg38): chr2:129869193-129877553
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003402; ENST00000450531; ENST00000450531.1; AC079776.1-001; OTTHUMT00000331350.2; NONHSAT074247
Alternative gene names: XLOC_002319; linc-HS6ST1-6; ENSG00000229536; AC079776.1; ENSG00000229536.1; OTTHUMG00000153489.2; ENSG00000229536.2; AC079776.2; LINC02572


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.1911 non-coding 
CPAT coding probability 5.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02572:14 no no no no

Available literature

  1. Ding (2017), Microarray expression profiling of long non-coding RNAs in epithelial ovarian cancer., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEF-2:1
3.1 lnc-POTEF-2:1
4.0 lnc-POTEF-2:1
4.1 lnc-POTEF-2:1
5.0 lnc-POTEF-2:1
5.1 LINC02572:7
5.2 LINC02572:14