Transcript: LINC02573:3

Basic information

LNCipedia transcript ID: LINC02573:3 
HGNC Gene Symbol: LINC02573    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2573
Ensembl Gene ID: ENSG00000233236
Ensembl Transcript ID: ENST00000436373
Location (hg38): chr21:20256752-20258820
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 864 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028879; ENST00000436373; ENST00000436373.1; AP001171.1-001; OTTHUMT00000158340.1; NONHSAT081344
Alternative gene names: XLOC_014018; linc-TMPRSS15-4; ENSG00000233236; AP001171.1; ENSG00000233236.1; OTTHUMG00000074606.1; LINC02573


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.5238 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02573:3 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-8:1
3.1 lnc-TMPRSS15-8:1
4.0 lnc-TMPRSS15-8:1
4.1 lnc-TMPRSS15-8:1
5.0 lnc-TMPRSS15-8:1
5.1 LINC02573:2
5.2 LINC02573:3