Transcript: LINC02580:10

Basic information

LNCipedia transcript ID: LINC02580:10 
LNCipedia gene ID: LINC02580
Location (hg38): chr2:43090913-43143114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6810 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230587.1|FTMT20500017430.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.5587 non-coding 
CPAT coding probability 4.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02580:10 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-THADA-1:5
5.0 lnc-THADA-1:5
5.1 LINC02580:3
5.2 LINC02580:10