Transcript: LINC02580:9

Basic information

LNCipedia transcript ID: LINC02580:9 
LNCipedia gene ID: LINC02580
Location (hg38): chr2:43070404-43143114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2604 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230587.1|FTMT20500017761.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -71.671 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02580:9 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-THADA-1:4
5.0 lnc-THADA-1:4
5.1 LINC02580:2
5.2 LINC02580:9