Transcript: LINC02593:25

Basic information

LNCipedia transcript ID: LINC02593:25 
LNCipedia gene ID: LINC02593
Location (hg38): chr1:916309-925604
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7240 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223764.2|ENCT00000020369.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.0662 non-coding 
CPAT coding probability 85.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02593:25 yes no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NOC2L-1:15
5.0 lnc-NOC2L-1:15
5.1 LINC02593:4
5.2 LINC02593:25