Transcript: LINC02593:29

Basic information

LNCipedia transcript ID: LINC02593:29 
LNCipedia gene ID: LINC02593
Location (hg38): chr1:922909-924924
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 827 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223764.2|FTMT20100066928.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 69.2215 coding 
CPAT coding probability 52.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02593:29 yes no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NOC2L-1:19
5.0 lnc-NOC2L-1:19
5.1 LINC02593:8
5.2 LINC02593:29