Transcript: LINC02593:35

Basic information

LNCipedia transcript ID: LINC02593:35 
HGNC Gene Symbol: LINC02593    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2593
Ensembl Gene ID: ENSG00000223764
Ensembl Transcript ID: ENST00000609207
Location (hg38): chr1:916865-921016
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4152 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609207.1
Alternative gene names: ENSG00000223764.2; RP11-54O7.3; AL645608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.0662 non-coding 
CPAT coding probability 44.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02593:35 no no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOC2L-1:5
4.0 lnc-NOC2L-1:5
4.1 lnc-NOC2L-1:5
5.0 lnc-NOC2L-1:5
5.1 LINC02593:14
5.2 LINC02593:35