Transcript: LINC02593:36

Basic information

LNCipedia transcript ID: LINC02593:36 
HGNC Gene Symbol: LINC02593    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2593
Ensembl Gene ID: ENSG00000223764
Ensembl Transcript ID: ENST00000417705
Location (hg38): chr1:916870-919692
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1389 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000445; ENST00000417705.1; RP11-54O7.3-001; OTTHUMT00000097858.1; NONHSAT000203
Alternative gene names: XLOC_000670; linc-OR4F16-2; ENSG00000223764.1; RP11-54O7.3; OTTHUMG00000040718.1; ENSG00000223764.2; AL645608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.4579 non-coding 
CPAT coding probability 45.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02593:36 no no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOC2L-1:1
3.1 lnc-NOC2L-1:1
4.0 lnc-NOC2L-1:1
4.1 lnc-NOC2L-1:1
5.0 lnc-NOC2L-1:1
5.1 LINC02593:15
5.2 LINC02593:36