Transcript: LINC02593:38

Basic information

LNCipedia transcript ID: LINC02593:38 
LNCipedia gene ID: LINC02593
RefSeq ID: NR_122045
Location (hg38): chr1:916818-919692
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1446 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122045; NR_122045.1
Alternative gene names: LOC100130417


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -92.4579 non-coding 
CPAT coding probability 12.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02593:38 no no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOC2L-1:8
4.0 lnc-NOC2L-1:8
4.1 lnc-NOC2L-1:8
5.0 lnc-NOC2L-1:8
5.1 LINC02593:17
5.2 LINC02593:38