Transcript: LINC02593:39

Basic information

LNCipedia transcript ID: LINC02593:39 
LNCipedia gene ID: LINC02593
Location (hg38): chr1:917573-919437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000073; NONHSAT000208
Alternative gene names: XLOC_000670; linc-OR4F16-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -441.4019 non-coding 
CPAT coding probability 7.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02593:39 no no no no

Available literature

  1. Li (2018), Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in breast cancer patients., Int. J. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOC2L-1:2
3.1 lnc-NOC2L-1:2
4.0 lnc-NOC2L-1:2
4.1 lnc-NOC2L-1:2
5.0 lnc-NOC2L-1:2
5.1 LINC02593:18
5.2 LINC02593:39