Transcript: LINCMD1:2

Basic information

LNCipedia transcript ID: LINCMD1:2 
HGNC Gene Symbol: LINCMD1    
HGNC Full Gene Name: long intergenic non-protein coding RNA, muscle differentiation 1
Ensembl Gene ID: ENSG00000225613
Ensembl Transcript ID: ENST00000418518
Location (hg38): chr6:52146814-52151119
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147416; ENST00000418518.2
Alternative gene names: ENSG00000225613.2; MIR133BHG; LINCMD1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -315.087 non-coding 
CPAT coding probability 20.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINCMD1:2 no no no no

Available literature

  1. Legnini (2014), A feedforward regulatory loop between HuR and the long noncoding RNA linc-MD1 controls early phases of myogenesis., Mol. Cell
  2. Cesana (2011), A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PKHD1-1:2
4.0 LINCMD1:2
4.1 LINCMD1:2
5.0 LINCMD1:2
5.1 LINCMD1:2
5.2 LINCMD1:2