Transcript: LINGO1-AS1:8

Basic information

LNCipedia transcript ID: LINGO1-AS1:8 
HGNC Gene Symbol: LINGO1-AS1    
HGNC Full Gene Name: LINGO1 antisense RNA 1
Ensembl Gene ID: ENSG00000259666
Ensembl Transcript ID: ENST00000558887
Location (hg38): chr15:77646342-77652288
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1124 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558887.2
Alternative gene names: ENSG00000259666.2; LINGO1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -133.0994 non-coding 
CPAT coding probability 7.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINGO1-AS1:8 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINGO1-AS1:8
4.1 LINGO1-AS1:8
5.0 LINGO1-AS1:8
5.1 LINGO1-AS1:8
5.2 LINGO1-AS1:8