Transcript: LINP1:7

Basic information

LNCipedia transcript ID: LINP1:7 
HGNC Gene Symbol: LINP1    
HGNC Full Gene Name: lncRNA in non-homologous end joining pathway 1
Ensembl Gene ID: ENSG00000223784
Ensembl Transcript ID: ENST00000417112
Location (hg38): chr10:6737382-6739026
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 917 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017779; ENST00000417112; ENST00000417112.1; RP11-554I8.2-001; OTTHUMT00000046668.1; NONHSAT011255
Alternative gene names: XLOC_008373; linc-ITIH2-7; ENSG00000223784; RP11-554I8.2; ENSG00000223784.1; OTTHUMG00000017625.1; LINP1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.9551 non-coding 
CPAT coding probability 10.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINP1:7 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA LINP1 regulates repair of DNA double-strand breaks in triple-negative breast cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL137145.1-5:1
3.1 lnc-AL137145.1-5:1
4.0 lnc-AL137145.1-5:1
4.1 lnc-AL137145.1-5:1
5.0 lnc-AL137145.1-5:1
5.1 LINP1:4
5.2 LINP1:7