Transcript: LIVAR:6

Basic information

LNCipedia transcript ID: LIVAR:6 
LNCipedia gene ID: LIVAR
Location (hg38): chr18:70336058-70337309
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 254 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026725
Alternative gene names: XLOC_012870; linc-RTTN-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.4104 non-coding 
CPAT coding probability 4.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIVAR:6 no no no no

Available literature

  1. Atanasovska (2017), A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTTN-1:1
3.1 lnc-RTTN-1:2
4.0 lnc-RTTN-1:2
4.1 lnc-RTTN-1:2
5.0 lnc-RTTN-1:2
5.1 LIVAR:3
5.2 LIVAR:6