Transcript: LIVAR:7

Basic information

LNCipedia transcript ID: LIVAR:7 
LNCipedia gene ID: LIVAR
Location (hg38): chr18:70335929-70337299
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 373 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000266304.1|ENST00000578633.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.3375 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIVAR:7 no no no no

Available literature

  1. Atanasovska (2017), A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RTTN-1:3
5.0 lnc-RTTN-1:3
5.1 LIVAR:4
5.2 LIVAR:7