Transcript: LLPH-DT:8

Basic information

LNCipedia transcript ID: LLPH-DT:8 
HGNC Gene Symbol: LLPH-DT    
HGNC Full Gene Name: LLPH divergent transcript
Ensembl Gene ID: ENSG00000239335
Ensembl Transcript ID: ENST00000510317
RefSeq ID: NR_125724
Location (hg38): chr12:66130751-66134449
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 623 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000510317.2; RP11-745O10.2-001; OTTHUMT00000401754.1; NONHSAT029219; NR_125724; NR_125724.1
Alternative gene names: ENSG00000239335.4; RP11-745O10.2; OTTHUMG00000168960.1; LLPH-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.1194 coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LLPH-DT:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRAK3-1:1
4.0 LLPH-AS1:1
4.1 LLPH-AS1:1
5.0 LLPH-AS1:1
5.1 LLPH-DT:2
5.2 LLPH-DT:8