Transcript: LMCD1-AS1:2

Basic information

LNCipedia transcript ID: LMCD1-AS1:2 
HGNC Gene Symbol: LMCD1-AS1    
HGNC Full Gene Name: LMCD1 antisense RNA 1
Ensembl Gene ID: ENSG00000227110
Ensembl Transcript ID: ENST00000458666
Location (hg38): chr3:8609438-8611900
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458666; ENST00000458666.1; AC087859.1-005; OTTHUMT00000337849.1; NONHSAT087719
Alternative gene names: ENSG00000227110; AC087859.1; ENSG00000227110.2; OTTHUMG00000154968.1; LMCD1-AS1; ENSG00000227110.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3278 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LMCD1-AS1:2 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C3orf32-3:2
3.1 lnc-C3orf32-2:2
4.0 LMCD1-AS1:2
4.1 LMCD1-AS1:2
5.0 LMCD1-AS1:2
5.1 LMCD1-AS1:2
5.2 LMCD1-AS1:2