Transcript: LNCAROD:13

Basic information

LNCipedia transcript ID: LNCAROD:13 
LNCipedia gene ID: LNCAROD
RefSeq ID: NR_120641
Location (hg38): chr10:52450877-52470533
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1007 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120641; NR_120641.1
Alternative gene names: lnc-MBL2-4; LINC01468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -153.4723 non-coding 
CPAT coding probability 9.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCAROD:13 no no no no

Available literature

  1. Ntini (2018), Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin., Nat Commun
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBL2-4:6
4.0 LINC01468:2
4.1 LINC01468:2
5.0 LINC01468:2
5.1 LNCAROD:3
5.2 LNCAROD:13