Transcript: LNCAROD:17

Basic information

LNCipedia transcript ID: LNCAROD:17 
LNCipedia gene ID: LNCAROD
Location (hg38): chr10:52444107-52455293
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7763 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231131.2|FTMT23700026224.1
Alternative gene names: lnc-MBL2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.6277 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCAROD:17 no no no no

Available literature

  1. Ntini (2018), Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin., Nat Commun
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01468:9
5.0 LINC01468:9
5.1 LNCAROD:7
5.2 LNCAROD:17