Transcript: LNCAROD:19

Basic information

LNCipedia transcript ID: LNCAROD:19 
LNCipedia gene ID: LNCAROD
RefSeq ID: NR_120642
Location (hg38): chr10:52450877-52455272
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 972 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435813; ENST00000435813.1; RP11-346D6.6-002; OTTHUMT00000048112.1; NR_120642; NR_120642.1
Alternative gene names: ENSG00000231131; RP11-346D6.6; ENSG00000231131.1; OTTHUMG00000018252.1; lnc-MBL2-4; LINC01468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.4723 non-coding 
CPAT coding probability 9.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCAROD:19 no no no no

Available literature

  1. Ntini (2018), Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin., Nat Commun
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBL2-3:2
3.1 lnc-MBL2-4:3
4.0 LINC01468:4
4.1 LINC01468:4
5.0 LINC01468:4
5.1 LNCAROD:9
5.2 LNCAROD:19