Transcript: LNCAROD:20

Basic information

LNCipedia transcript ID: LNCAROD:20 
LNCipedia gene ID: LNCAROD
Location (hg38): chr10:52450878-52455272
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 971 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00017736
Alternative gene names: XLOC_008823; linc-CSTF2T-3; lnc-MBL2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.4723 non-coding 
CPAT coding probability 9.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCAROD:20 no no no no

Available literature

  1. Ntini (2018), Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin., Nat Commun
  2. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBL2-3:3
3.1 lnc-MBL2-4:2
4.0 LINC01468:5
4.1 LINC01468:5
5.0 LINC01468:5
5.1 LNCAROD:10
5.2 LNCAROD:20