Transcript: LNCARSR:14

Basic information

LNCipedia transcript ID: LNCARSR:14 
HGNC Gene Symbol: LNCARSR    
HGNC Full Gene Name: lncRNA regulator of Akt signaling associated with HCC and RCC
Ensembl Gene ID: ENSG00000233086
Ensembl Transcript ID: ENST00000424980
Location (hg38): chr9:79505804-79532342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 328 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015836; ENST00000424980; ENST00000424980.1; RP11-375O18.2-001; OTTHUMT00000052782.1; NONHSAT132007; ENST00000424980.5
Alternative gene names: XLOC_007747; linc-GNAQ-7; ENSG00000233086; RP11-375O18.2; ENSG00000233086.1; OTTHUMG00000020070.1; ENSG00000233086.3; ENSG00000233086.7; AL358975.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -639.1107 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCARSR:14 no no no no

Available literature

  1. Huang (2018), Long noncoding RNA lncARSR promotes hepatic cholesterol biosynthesis via modulating Akt/SREBP-2/HMGCR pathway., Life Sci.
  2. Zhang (2018), Long noncoding RNA lncARSR promotes hepatic lipogenesis via Akt/SREBP-1c pathway and contributes to the pathogenesis of nonalcoholic steatohepatitis., Biochem. Biophys. Res. Commun.
  3. Li (2017), Long Noncoding RNA lncARSR Promotes Doxorubicin Resistance in Hepatocellular Carcinoma via Modulating PTEN-PI3K/Akt Pathway., J. Cell. Biochem.
  4. Qu (2016), Exosome-Transmitted lncARSR Promotes Sunitinib Resistance in Renal Cancer by Acting as a Competing Endogenous RNA., Cancer Cell
  5. Qu (2016), A feed-forward loop between lncARSR and YAP activity promotes expansion of renal tumour-initiating cells., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAQ-4:4
3.1 lnc-GNAQ-3:5
4.0 lnc-GNAQ-3:5
4.1 lnc-GNAQ-3:5
5.0 lnc-GNAQ-3:5
5.1 LNCARSR:5
5.2 LNCARSR:14