Transcript: LNCOC1:13

Basic information

LNCipedia transcript ID: LNCOC1:13 
HGNC Gene Symbol: LNCOC1    
HGNC Full Gene Name: lncRNA associated with ovarian cancer 1
Ensembl Gene ID: ENSG00000253741
Ensembl Transcript ID: ENST00000520572
RefSeq ID: NR_038925
Location (hg38): chr8:142702252-142726973
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5684 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000520572.1; CTD-2292P10.4-001; OTTHUMT00000379959.1; NONHSAT129479; NR_038925; NR_038925.1
Alternative gene names: ENSG00000253741.1; CTD-2292P10.4; OTTHUMG00000164731.1; AC108002.1; LOC100288181


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.6635 non-coding 
CPAT coding probability 36.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCOC1:13 no no no no

Available literature

  1. Tao (2018), A novel lncRNA, Lnc-OC1, promotes ovarian cancer cell proliferation and migration by sponging miR-34a and miR-34c., J Genet Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLURP1-2:1
4.0 lnc-SLURP1-2:1
4.1 lnc-SLURP1-2:1
5.0 lnc-SLURP1-2:1
5.1 LNCOC1:7
5.2 LNCOC1:13