Transcript: LNX1-AS1:3

Basic information

LNCipedia transcript ID: LNX1-AS1:3 
HGNC Gene Symbol: LNX1-AS1    
HGNC Full Gene Name: LNX1 antisense RNA 1
Ensembl Gene ID: ENSG00000250930
Ensembl Transcript ID: ENST00000510785
Location (hg38): chr4:53500078-53523274
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 550 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510785.1; LNX1-AS1-001; OTTHUMT00000361534.1
Alternative gene names: ENSG00000250930.1; LNX1-AS1; OTTHUMG00000160644.1; ENSG00000250930.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4788 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNX1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSX2-4:2
4.0 LNX1-AS1:3
4.1 LNX1-AS1:3
5.0 LNX1-AS1:3
5.1 LNX1-AS1:3
5.2 LNX1-AS1:3