Transcript: LPP-AS1:1

Basic information

LNCipedia transcript ID: LPP-AS1:1 
HGNC Gene Symbol: LPP-AS1    
HGNC Full Gene Name: LPP antisense RNA 1
Ensembl Gene ID: ENSG00000224563
Ensembl Transcript ID: ENST00000434996
Location (hg38): chr3:188562238-188568666
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434996.1; LPP-AS1-001; OTTHUMT00000344051.1; NONHSAT093910
Alternative gene names: ENSG00000224563.1; LPP-AS1; OTTHUMG00000156388.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.9435 non-coding 
CPAT coding probability 3.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LPP-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCL6-6:1
4.0 LPP-AS1:1
4.1 LPP-AS1:1
5.0 LPP-AS1:1
5.1 LPP-AS1:1
5.2 LPP-AS1:1